PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC23716_p1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 200aa    MW: 22803.7 Da    PI: 9.8225
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC23716_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH47.33.8e-152879155
                 CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH  1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                 +r++h ++Er+RR+++N+ +  Lr+l+P++   ++++ + a+i+  A++Y+k+L+
  RrC23716_p1 28 QRMTHIAVERNRRKQMNEYLGVLRSLMPSS---YAQRGDQASIVGGAINYVKELE 79
                 79****************************...*******************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.104.5E-142681IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.60E-122683No hitNo description
PROSITE profilePS5088815.9482778IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.79E-172791IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.0E-122879IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-93384IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MENHSPIQPR RKRRRTRSNK NKEEIESQRM THIAVERNRR KQMNEYLGVL RSLMPSSYAQ  60
RGDQASIVGG AINYVKELEH ILQSMEPRRT TTTTHEADTS TNSLMSPFSE FFTYPQYSTK  120
SSSSATENSS SPTEIEVTVA EGHANIKIMT KRKPRQLLQL VDSIQSLGLT LLHLNVTTLD  180
NSILYSISVK LINHEILESD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11014RKRRR
21015RKRRRT
32839RMTHIAVERNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013584555.11e-109PREDICTED: transcription factor bHLH94-like
RefseqXP_013639984.11e-109PREDICTED: transcription factor bHLH94-like
SwissprotQ9SK912e-93BH094_ARATH; Transcription factor bHLH94
TrEMBLA0A078EU881e-109A0A078EU88_BRANA; BnaC05g17780D protein
TrEMBLA0A0D3CCF41e-109A0A0D3CCF4_BRAOL; Uncharacterized protein
TrEMBLM4FIC71e-109M4FIC7_BRARP; Uncharacterized protein
STRINGBra040856.1-P1e-108(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM111627102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22490.14e-84bHLH family protein